DNA methylation markers for risk of metastasis in a cohort of men with localized prostate cancer Epigenetics. 2024 Dec; 19(1):2308920. . View in PubMed

Epigenome-wide association study of total nicotine equivalents in multiethnic current smokers from three prospective cohorts Am J Hum Genet. 2024 Mar 07; 111(3):456-472. . View in PubMed

Genome-wide methylation profiling of diagnostic tumor specimens identified DNA methylation markers associated with metastasis among men with untreated localized prostate cancer Cancer Med. 2023 Sep; 12(18):18837-18849. . View in PubMed

Integrated DNA Methylation/RNA Profiling in Middle Temporal Gyrus of Alzheimer's Disease Cell Mol Neurobiol. 2023 Jul; 43(5):2289-2307. . View in PubMed

Cell-free DNA Methylation as a Predictive Biomarker of Response to Neoadjuvant Chemotherapy for Patients with Muscle-invasive Bladder Cancer in SWOG S1314 Eur Urol Oncol. 2023 10; 6(5):516-524. . View in PubMed

DNA methylation at birth in monozygotic twins discordant for pediatric acute lymphoblastic leukemia Nat Commun. 2022 Oct 14; 13(1):6077. . View in PubMed

Comprehensive epigenomic profiling of human alveolar epithelial differentiation identifies key epigenetic states and transcription factor co-regulatory networks for maintenance of distal lung identity BMC Genomics. 2021 Dec 18; 22(1):906. . View in PubMed

Functional human genes typically exhibit epigenetic conservation PLoS One. 2021; 16(9):e0253250. . View in PubMed

The genome-wide impact of trisomy 21 on DNA methylation and its implications for hematopoiesis Nat Commun. 2021 02 05; 12(1):821. . View in PubMed

A Novel DNA Methylation Signature as an Independent Prognostic Factor in Muscle-Invasive Bladder Cancer Front Oncol. 2021; 11:614927. . View in PubMed

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A novel role for vaping in mitochondrial gene dysregulation and inflammation fundamental to disease development Sci Rep. 2021 11 23; 11(1):22773. . View in PubMed

DNA Methylation Profiles of Vegans and Non-Vegetarians in the Adventist Health Study-2 Cohort Nutrients. 2020 Nov 30; 12(12). . View in PubMed

Epigenetic Conservation Is a Beacon of Function: An Analysis Using Methcon5 Software for Studying Gene Methylation JCO Clin Cancer Inform. 2020 02; 4:100-107. . View in PubMed

Epigenetic plasticity potentiates a rapid cyclical shift to and from an aggressive cancer phenotype Int J Cancer. 2020 06 01; 146(11):3065-3076. . View in PubMed

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Mutational signatures in colon cancer BMC Res Notes. 2019 Dec 03; 12(1):788. . View in PubMed

Systematic Review and Meta-analysis of Testicular Germ Cell Tumors Following In Utero Exposure to Diethylstilbestrol JNCI Cancer Spectr. 2019 Sep; 3(3):pkz045. . View in PubMed

Deregulation of Biologically Significant Genes and Associated Molecular Pathways in the Oral Epithelium of Electronic Cigarette Users Int J Mol Sci. 2019 Feb 10; 20(3). . View in PubMed

DNA methylation patterns of adult survivors of adolescent/young adult Hodgkin lymphoma compared to their unaffected monozygotic twin Leuk Lymphoma. 2019 06; 60(6):1429-1437. . View in PubMed

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Comprehensive meta-analysis reveals association between multiple imprinting disorders and conception by assisted reproductive technology J Assist Reprod Genet. 2018 Jun; 35(6):943-952. . View in PubMed

Spatial mutation patterns as markers of early colorectal tumor cell mobility Proc Natl Acad Sci U S A. 2018 05 29; 115(22):5774-5779. . View in PubMed

Epigenetic Heterogeneity in Human Colorectal Tumors Reveals Preferential Conservation And Evidence of Immune Surveillance Sci Rep. 2018 11 23; 8(1):17292. . View in PubMed

Association of internal smoking dose with blood DNA methylation in three racial/ethnic populations Clin Epigenetics. 2018 08 23; 10(1):110. . View in PubMed

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Self-reported prenatal tobacco smoke exposure, AXL gene-body methylation, and childhood asthma phenotypes Clin Epigenetics. 2018 07 20; 10(1):98. . View in PubMed

Total Outflow Facility in Live C57BL/6 Mice of Different Age Biomed Hub. 2017 Sep-Dec; 2(3):1-10. . View in PubMed

Improving needle biopsy accuracy in small renal mass using tumor-specific DNA methylation markers Oncotarget. 2017 Jan 17; 8(3):5439-5448. . View in PubMed

Cross-Species Transcriptome Profiling Identifies New Alveolar Epithelial Type I Cell-Specific Genes Am J Respir Cell Mol Biol. 2017 03; 56(3):310-321. . View in PubMed

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Identifying aggressive prostate cancer foci using a DNA methylation classifier Genome Biol. 2017 01 12; 18(1):3. . View in PubMed

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A panel of three markers hyper- and hypomethylated in urine sediments accurately predicts bladder cancer recurrence Clin Cancer Res. 2014 Apr 01; 20(7):1978-89. . View in PubMed

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Prenatal tobacco smoke exposure is associated with childhood DNA CpG methylation PLoS One. 2014; 9(6):e99716. . View in PubMed

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Recommendations for the design and analysis of epigenome-wide association studies Nat Methods. 2013 Oct; 10(10):949-55. . View in PubMed

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Particulate matter, DNA methylation in nitric oxide synthase, and childhood respiratory disease Environ Health Perspect. 2012 Sep; 120(9):1320-6. . View in PubMed

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Genome-scale analysis of DNA methylation in lung adenocarcinoma and integration with mRNA expression Genome Res. 2012 Jul; 22(7):1197-211. . View in PubMed

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Repeated assessment by high-throughput assay demonstrates that sperm DNA methylation levels are highly reproducible Fertil Steril. 2011 Dec; 96(6):1325-30. . View in PubMed

Soy food supplementation, dietary fat reduction and peripheral blood gene expression in postmenopausal women--a randomized, controlled trial Mol Nutr Food Res. 2011 Sep; 55 Suppl 2:S264-77. . View in PubMed

Heterogenous effect of androgen receptor CAG tract length on testicular germ cell tumor risk: shorter repeats associated with seminoma but not other histologic types Carcinogenesis. 2011 Aug; 32(8):1238-43. . View in PubMed

DNA methylation in the arginase-nitric oxide synthase pathway is associated with exhaled nitric oxide in children with asthma Am J Respir Crit Care Med. 2011 Jul 15; 184(2):191-7. . View in PubMed

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Genome-scale screen for DNA methylation-based detection markers for ovarian cancer PLoS One. 2011; 6(12):e28141. . View in PubMed

High DNA methylation pattern intratumoral diversity implies weak selection in many human colorectal cancers PLoS One. 2011; 6(6):e21657. . View in PubMed

DNA methylation changes in atypical adenomatous hyperplasia, adenocarcinoma in situ, and lung adenocarcinoma PLoS One. 2011; 6(6):e21443. . View in PubMed

Epigenetic subgroups of esophageal and gastric adenocarcinoma with differential GATA5 DNA methylation associated with clinical and lifestyle factors PLoS One. 2011; 6(10):e25985. . View in PubMed

The PREMM(1,2,6) model predicts risk of MLH1, MSH2, and MSH6 germline mutations based on cancer history Gastroenterology. 2011 Jan; 140(1):73-81. . View in PubMed

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Unique DNA methylation patterns distinguish noninvasive and invasive urothelial cancers and establish an epigenetic field defect in premalignant tissue Cancer Res. 2010 Oct 15; 70(20):8169-78. . View in PubMed

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Using DNA methylation patterns to infer tumor ancestry PLoS One. 2010 Aug 09; 5(8):e12002. . View in PubMed

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Hypomethylation of a LINE-1 promoter activates an alternate transcript of the MET oncogene in bladders with cancer PLoS Genet. 2010 Apr 22; 6(4):e1000917. . View in PubMed

Identification and functional relevance of de novo DNA methylation in cancerous B-cell populations J Cell Biochem. 2010 Mar 01; 109(4):818-27. . View in PubMed

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Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue- and individual-specific DNA methylation patterns Hum Mol Genet. 2009 Dec 15; 18(24):4808-17. . View in PubMed

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Many colorectal cancers are "flat" clonal expansions Cell Cycle. 2009 Jul 15; 8(14):2187-93. . View in PubMed

Inferring clonal expansion and cancer stem cell dynamics from DNA methylation patterns in colorectal cancers Proc Natl Acad Sci U S A. 2009 Mar 24; 106(12):4828-33. . View in PubMed

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Red meat and poultry intake, polymorphisms in the nucleotide excision repair and mismatch repair pathways and colorectal cancer risk Carcinogenesis. 2009 Mar; 30(3):472-9. . View in PubMed

mtDNA depletion confers specific gene expression profiles in human cells grown in culture and in xenograft BMC Genomics. 2008 Nov 03; 9:521. . View in PubMed

Molecular characterization of MSI-H colorectal cancer by MLHI promoter methylation, immunohistochemistry, and mismatch repair germline mutation screening Cancer Epidemiol Biomarkers Prev. 2008 Nov; 17(11):3208-15. . View in PubMed

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Inferring relative numbers of human leucocyte genome replications Br J Haematol. 2008 Jun; 141(6):862-71. . View in PubMed

DNA methylation profiles in diffuse large B-cell lymphoma and their relationship to gene expression status Leukemia. 2008 May; 22(5):1035-43. . View in PubMed

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Widespread epigenetic abnormalities suggest a broad DNA methylation erasure defect in abnormal human sperm PLoS One. 2007 Dec 12; 2(12):e1289. . View in PubMed

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DNA methylation in the human cerebral cortex is dynamically regulated throughout the life span and involves differentiated neurons PLoS One. 2007 Sep 19; 2(9):e895. . View in PubMed

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XRCC1, XRCC3, and XPD polymorphisms as modifiers of the effect of smoking and alcohol on colorectal adenoma risk Cancer Epidemiol Biomarkers Prev. 2006 Dec; 15(12):2384-90. . View in PubMed

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CpG island methylator phenotype underlies sporadic microsatellite instability and is tightly associated with BRAF mutation in colorectal cancer Nat Genet. 2006 Jul; 38(7):787-93. . View in PubMed

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Prognostic relevance of methylation markers in patients with non-muscle invasive bladder carcinoma Eur J Cancer. 2005 Nov; 41(17):2769-78. . View in PubMed

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