Faculty
Joshua Millstein
Role of CD47 gene expression in colorectal cancer: a comprehensive molecular profiling study J Immunother Cancer. 2024 Nov 05; 12(11). . View in PubMed
Exploring Predictive and Prognostic Biomarkers in Colorectal Cancer: A Comprehensive Review Cancers (Basel). 2024 Aug 08; 16(16). . View in PubMed
Predictive value of CDC37 gene expression for targeted therapy in metastatic colorectal cancer Eur J Cancer. 2024 Apr; 201:113914. . View in PubMed
CausNet-partial : 'Partial Generational Orderings' based search for optimal sparse Bayesian networks via dynamic programming with parent set constraints Res Sq. 2024 Mar 07. . View in PubMed
CCR5 and CCL5 gene expression in colorectal cancer: comprehensive profiling and clinical value J Immunother Cancer. 2024 01 11; 12(1). . View in PubMed
Association between late-life air pollution exposure and medial temporal lobe atrophy in older women medRxiv. 2023 Nov 29. . View in PubMed
Alzheimer's Related Neurodegeneration Mediates Air Pollution Effects on Medial Temporal Lobe Atrophy medRxiv. 2023 Nov 29. . View in PubMed
Impact of genetic variants involved in the lipid metabolism pathway on progression free survival in patients receiving bevacizumab-based chemotherapy in metastatic colorectal cancer: a retrospective analysis of FIRE-3 and MAVERICC trials EClinicalMedicine. 2023 Mar; 57:101827. . View in PubMed
CausNet: generational orderings based search for optimal Bayesian networks via dynamic programming with parent set constraints BMC Bioinformatics. 2023 Feb 14; 24(1):46. . View in PubMed
Transcriptional Profiling and Consensus Molecular Subtype Assignment to Understand Response and Resistance to Anti-Epidermal Growth Factor Receptor Therapy in Colorectal Cancer JCO Precis Oncol. 2023 07; 7:e2200422. . View in PubMed
Breast cancer and neurotransmitters: emerging insights on mechanisms and therapeutic directions Oncogene. 2023 02; 42(9):627-637. . View in PubMed
Mutational analysis of microsatellite-stable gastrointestinal cancer with high tumour mutational burden: a retrospective cohort study Lancet Oncol. 2023 02; 24(2):151-161. . View in PubMed
ACDC: a general approach for detecting phenotype or exposure associated co-expression Front Med (Lausanne). 2023; 10:1118824. . View in PubMed
CCNE1 and survival of patients with tubo-ovarian high-grade serous carcinoma: An Ovarian Tumor Tissue Analysis consortium study Cancer. 2023 03 01; 129(5):697-713. . View in PubMed
Ambient air pollution exposure and increasing depressive symptoms in older women: The mediating role of the prefrontal cortex and insula Sci Total Environ. 2022 Jun 01; 823:153642. . View in PubMed
MCM3 is a novel proliferation marker associated with longer survival for patients with tubo-ovarian high-grade serous carcinoma Virchows Arch. 2022 Apr; 480(4):855-871. . View in PubMed
Neurotransmitter signaling: a new frontier in colorectal cancer biology and treatment Oncogene. 2022 10; 41(43):4769-4778. . View in PubMed
Genetic variants involved in the cGAS-STING pathway predict outcome in patients with metastatic colorectal cancer: Data from FIRE-3 and TRIBE trials Eur J Cancer. 2022 09; 172:22-30. . View in PubMed
Germline Polymorphisms in Genes Involved in the Antioxidant System Predict the Efficacy of Cetuximab in Metastatic Colorectal Cancer Patients Enrolled in FIRE-3 Trial Clin Colorectal Cancer. 2022 09; 21(3):259-266. . View in PubMed
Air quality improvement and cognitive decline in community-dwelling older women in the United States: A longitudinal cohort study PLoS Med. 2022 02; 19(2):e1003893. . View in PubMed
Molecular characteristics and clinical outcomes of patients with Neurofibromin 1-altered metastatic colorectal cancer Oncogene. 2022 01; 41(2):260-267. . View in PubMed
Germline polymorphisms in genes maintaining the replication fork predict the efficacy of oxaliplatin and irinotecan in patients with metastatic colorectal cancer Br J Cancer. 2022 01; 126(1):72-78. . View in PubMed
fdrci: FDR confidence interval selection and adjustment for large-scale hypothesis testing Bioinform Adv. 2022; 2(1):vbac047. . View in PubMed
Association of improved air quality with lower dementia risk in older women Proc Natl Acad Sci U S A. 2022 01 11; 119(2). . View in PubMed
Distinct genomic landscapes of gastroesophageal adenocarcinoma depending on PD-L1 expression identify mutations in RAS-MAPK pathway and TP53 as potential predictors of immunotherapy efficacy Ann Oncol. 2021 07; 32(7):906-916. . View in PubMed
Large-scale analysis of KMT2 mutations defines a distinctive molecular subset with treatment implication in gastric cancer Oncogene. 2021 07; 40(30):4894-4905. . View in PubMed
Germ line polymorphisms of genes involved in pluripotency transcription factors predict efficacy of cetuximab in metastatic colorectal cancer Eur J Cancer. 2021 06; 150:133-142. . View in PubMed
RNA-Binding Protein Polymorphisms as Novel Biomarkers to Predict Outcomes of Metastatic Colorectal Cancer: A Meta-analysis from TRIBE, FIRE-3, and MAVERICC Mol Cancer Ther. 2021 06; 20(6):1153-1160. . View in PubMed
Prevalence and risk factors for cisplatin-induced hearing loss in children, adolescents, and young adults: a multi-institutional North American cohort study Lancet Child Adolesc Health. 2021 04; 5(4):274-283. . View in PubMed
The Landscape of Alterations in DNA Damage Response Pathways in Colorectal Cancer Clin Cancer Res. 2021 06 01; 27(11):3234-3242. . View in PubMed
Associations Between Air Pollution Exposure and Empirically Derived Profiles of Cognitive Performance in Older Women J Alzheimers Dis. 2021; 84(4):1691-1707. . View in PubMed
Random survival forests identify pathways with polymorphisms predictive of survival in KRAS mutant and KRAS wild-type metastatic colorectal cancer patients Sci Rep. 2021 06 09; 11(1):12191. . View in PubMed
Molecular Characterization of Appendiceal Goblet Cell Carcinoid Mol Cancer Ther. 2020 12; 19(12):2634-2640. . View in PubMed
Immunogenic cell death pathway polymorphisms for predicting oxaliplatin efficacy in metastatic colorectal cancer J Immunother Cancer. 2020 11; 8(2). . View in PubMed
Prognostic gene expression signature for high-grade serous ovarian cancer Ann Oncol. 2020 09; 31(9):1240-1250. . View in PubMed
Correction to: Infectious mononucleosis, immune genotypes, and non-Hodgkin lymphoma (NHL): an InterLymph Consortium study Cancer Causes Control. 2020 06; 31(6):607. . View in PubMed
Infectious mononucleosis, immune genotypes, and non-Hodgkin lymphoma (NHL): an InterLymph Consortium study Cancer Causes Control. 2020 05; 31(5):451-462. . View in PubMed
Association of HLA Genotype With T-Cell Activation in Human Immunodeficiency Virus (HIV) and HIV/Hepatitis C Virus-Coinfected Women J Infect Dis. 2020 03 16; 221(7):1156-1166. . View in PubMed
Partition: a surjective mapping approach for dimensionality reduction Bioinformatics. 2020 02 01; 36(3):676-681. . View in PubMed
Lactose-reduced infant formula with added corn syrup solids is associated with a distinct gut microbiota in Hispanic infants Gut Microbes. 2020 11 09; 12(1):1813534. . View in PubMed
Are Epithelial Ovarian Cancers of the Mesenchymal Subtype Actually Intraperitoneal Metastases to the Ovary? Front Cell Dev Biol. 2020; 8:647.. View in PubMed
partition: A fast and flexible framework for data reduction in R J Open Source Softw. 2020; 5(47). . View in PubMed
Impact of polymorphisms within genes involved in regulating DNA methylation in patients with metastatic colorectal cancer enrolled in three independent, randomised, open-label clinical trials: a meta-analysis from TRIBE, MAVERICC and FIRE-3 Eur J Cancer. 2019 04; 111:138-147. . View in PubMed
Prognostic Effect of Adenosine-related Genetic Variants in Metastatic Colorectal Cancer Treated With Bevacizumab-based Chemotherapy Clin Colorectal Cancer. 2019 03; 18(1):e8-e19. . View in PubMed
AMPK variant, a candidate of novel predictor for chemotherapy in metastatic colorectal cancer: A meta-analysis using TRIBE, MAVERICC and FIRE3 Int J Cancer. 2019 10 15; 145(8):2082-2090. . View in PubMed
High intake of dietary fructose in overweight/obese teenagers associated with depletion of Eubacterium and Streptococcus in gut microbiome Gut Microbes. 2019; 10(6):712-719. . View in PubMed
Gene Coexpression Networks in Whole Blood Implicate Multiple Interrelated Molecular Pathways in Obesity in People with Asthma Obesity (Silver Spring). 2018 12; 26(12):1938-1948. . View in PubMed
Role of local CpG DNA methylation in mediating the 17q21 asthma susceptibility gasdermin B (GSDMB)/ORMDL sphingolipid biosynthesis regulator 3 (ORMDL3) expression quantitative trait locusJ Allergy Clin Immunol. 2018 06; 141(6):2282-2286. e6. . View in PubMed
Genetic-Epigenetic Interactions in Asthma Revealed by a Genome-Wide Gene-Centric Search Hum Hered. 2018; 83(3):130-152. . View in PubMed
Self-reported prenatal tobacco smoke exposure, AXL gene-body methylation, and childhood asthma phenotypes Clin Epigenetics. 2018 07 20; 10(1):98. . View in PubMed
Association between AXL promoter methylation and lung function growth during adolescence Epigenetics. 2018; 13(10-11):1027-1038. . View in PubMed
Single-Cell Digital Lysates Generated by Phase-Switch Microfluidic Device Reveal Transcriptome Perturbation of Cell Cycle ACS Nano. 2018 05 22; 12(5):4687-4694. . View in PubMed
Epigenetic regulation of AXL and risk of childhood asthma symptoms Clin Epigenetics. 2017; 9:121. . View in PubMed
Gene Expression Profiling in Blood Provides Reproducible Molecular Insights into Asthma Control Am J Respir Crit Care Med. 2017 01 15; 195(2):179-188. . View in PubMed
Prenatal Air Pollution Exposures, DNA Methyl Transferase Genotypes, and Associations with Newborn LINE1 and Alu Methylation and Childhood Blood Pressure and Carotid Intima-Media Thickness in the Children's Health Study Environ Health Perspect. 2016 12; 124(12):1905-1912. . View in PubMed
cit: hypothesis testing software for mediation analysis in genomic applications Bioinformatics. 2016 08 01; 32(15):2364-5. . View in PubMed
NPPB is a novel candidate biomarker expressed by cancer-associated fibroblasts in epithelial ovarian cancer Int J Cancer. 2015 Mar 15; 136(6):1390-401. . View in PubMed
Alteration of select gene expression patterns in individuals infected with HIV-1 J Med Virol. 2014 Apr; 86(4):678-86. . View in PubMed
Screening-testing approaches for gene-gene and gene-environment interactions using independent statistics Front Genet. 2013; 4:306. . View in PubMed
Computationally efficient permutation-based confidence interval estimation for tail-area FDR Front Genet. 2013; 4:179. . View in PubMed
Mapping the genetic architecture of gene expression in human liver PLoS Biol. 2008 May 06; 6(5):e107. . View in PubMed
Health effects of the 2003 Southern California wildfires on children Am J Respir Crit Care Med. 2006 Dec 01; 174(11):1221-8. . View in PubMed
A testing framework for identifying susceptibility genes in the presence of epistasis Am J Hum Genet. 2006 Jan; 78(1):15-27. . View in PubMed
Identifying susceptibility genes by using joint tests of association and linkage and accounting for epistasis BMC Genet. 2005 Dec 30; 6 Suppl 1:S147. . View in PubMed
Birth outcomes and prenatal exposure to ozone, carbon monoxide, and particulate matter: results from the Children's Health Study Environ Health Perspect. 2005 Nov; 113(11):1638-44. . View in PubMed
Testing association and linkage using affected-sib-parent study designs Genet Epidemiol. 2005 Nov; 29(3):225-33. . View in PubMed
Effects of ambient air pollutants on asthma medication use and wheezing among fourth-grade school children from 12 Southern California communities enrolled in The Children's Health Study Arch Environ Health. 2004 Oct; 59(10):505-14. . View in PubMed
Comparison of age-length and growth-increment general growth models of the Schnute type in the Pacific Blue Mussel, Mytilus trossulus Gould J Exp Mar Biol Ecol. 2001 Jul 30; 262(2):155-176. . View in PubMed